Software developed in our lab

The following software tools have been developed in our lab and are available for download. Please click on the individual software titles for further information and instructions on how to obtain the software.

Estimation Tool: Single-molecule parameter estimation

An application to localize single molecules using various estimators, point-spread function models, and noise models, with additional capabilities of visualizing and exporting results. more… Request Access to Software…

FandPLimitTool: Single-molecule localization/resolution accuracy

A tool to calculate localization/resolution accuracy limits in 2D/3D, i.e. to calculate Fisher information matrix (FIM) and Cramer-Rao lower bound (CRLB), which can aid in the design and execution of imaging experiments. more… Request Access to Software…

MIATool: Microscopy image analysis

A software application designed for viewing and processing large multi-dimensional sets of image data, with capabilites to perform image adjustements, generate overlays, and many other functionalities. more… Request Access to Software…

MUMDesignTool: Designing the focal plane spacing for MUM

A toolbox, under the FandPLimitTool, for the design of the focal plane spacing for MUM setups with up to 10 focal planes. This toolbox can calculate the Fisher information matrix (FIM) and the Cramer-Rao lower bound (CRLB) in real-time for different focal planes, and therefore can help in optimizing MUM experiments. more… Request Access to Software…